Thing with the breakfast is that I tried ignoring but she just keeps yelling for it. So how about this. What if I put in her breakfast BEFORE she starts screaming. She usually wakes up and screams at like 8 so what if I put in her breakfast at 730? This way she won't have to scream?
See, now you are starting to think about prevention =).
So today I am seeing this as a new start. No more pushing his buttons to make her feel uneasy. Today I started with some target training inside cage and it went well. Then I opened cage and she came up and we continued target training on too of cage and everything went well. She went to target and touched stick I clicked and gave her treat and praised her every time. Now I am going to give her space while I start working but I am going to target her in a stick so I can move her 10 feet from her cage to the play tree so we can be near each other where we can still communicate but not to close where she feels like I am in her space. Then my plan for today is to do another 1-2 sessions of just target training that's it.
Personally I would slow down a bit more, if you had progress with target training in the cage, thats great, and I would keep up the positive spirit this is creating, for you and your bird both. I wouldnt have moved passed that in a day, but then again I am not there and can see whats happening.
I wouldnt remove your bird from the cage until I was confident that she is calm and happy about her new environment, but again, its up to you how you do it.
Targeting her onto a stick is a great start, and actually how I think how you should teach step up to a bird that is fearful of hands. This is how we taught it to Leroy, who was an aviary parent-raised bird before he came to us, with no handling previously. Target your parrot to the stick and then over a course of days or weeks (not a day dammit

), slowly decrease the ammount of perch in your hand until you are targeting your bird onto your hand/finger. Eventually she will step up without a hassle, trust me

!
Over all I think you are doing well, just that you are rushing things, you aint in a hurry! I can understand, because I did the same with Stitch, but you really have NOTHING to gain by going to fast here. Patience, hard work, and a little luck will see that you will build a great bond with your new sennie.
Oh, since you've written his and hers, she and he, is it a female or a male, and whats your new birds name?
Cheers.