I'm not an expert on triglycerides either, but they are a type of fatty molecule and are the main constituent of body fat. The Mayo Clinic has a short simple explanation that won't answer any technical questions, but it does identify excess calorie consumption as a major factor in their production and makes dietary recommendations for reducing them:
http://www.mayoclinic.org/diseases-cond ... t-20048186Life can't be sustained without dietary amino acids, so ultimately every function in the body and every problem in the body can be traced back to them in one way or another. But that doesn't mean that dietary amino acids are the cause of a particular problem unless there is a direct observable relationship between amino acid consumption and the problem. The only major problem in birds that seems to have been linked to high protein levels is gout. I can see the reason for that - excess protein in the diet causes a rise in urea excretion, and gout is caused by uric acid deposits. Kidney disease was also suspected because the kidneys have to process the urea, but the cockatiel study has raised doubts about this since they failed to induce any kind of kidney damage with a very high protein diet. Here's a short Wikipedia section on the fate of excess protein in the human body:
https://en.wikipedia.org/wiki/Protein_% ... onsumption Excess amino acids can be converted to glucose or ketones, which can be burned for fuel (and presumably turned into fat if not used).
But any connection between fatty liver disease and excess protein consumption isn't nearly as obvious as the connection between excess fat and carb consumption. ANY kind of excess calories in the diet can end up being stored in the body as fat, but protein is a poor source of calories compared to fat and carbohydrates, and it has other uses in the body that are more important. This link talks about the thermic effect of different energy sources in simple English:
http://authoritynutrition.com/6-reasons ... a-calorie/ 100 calories of fat consumed produces 97-98 calories of usable energy; 100 calories of carbs produces 92-94 calories of usable energy; and protein produces 70-75 calories of usable energy. So you can probably see why protein isn't considered to be the main villain here. It doesn't translate into fat as successfully as other types of macronutrients do, and a lot of it is likely to be used for something else.
There are some proteins in cholesterol (lipoproteins and apoproteins), but these are proteins that are synthesized in the body to help cholesterol do its job. Cholesterol serves several vital functions in the body and is synthesized in the body for that purpose, but excessive amounts are bad. Until recently, it was thought that dietary cholesterol caused health problems for humans, but this idea was dismissed a few months ago:
http://time.com/3705734/cholesterol-dietary-guidelines/ But excess calories in the diet, especially fat and carbohydrates, are still thought to be a major factor. Here's the Mayo Clinic again, telling people to reduce cholesterol by watching their fat content, eating lots of fiber, getting their Omega 3s, and adding whey protein to the diet. My response to that is "Why whey?" lol, but I didn't bother to look into it.
http://www.mayoclinic.org/diseases-cond ... t-20045935